fdrame

FDR adjustments of Microarray Experiments (FDR-AME)

Bioconductor version: 2.8

This package contains two main functions. The first is fdr.ma which takes normalized expression data array, experimental design and computes adjusted p-values It returns the fdr adjusted p-values and plots, according to the methods described in (Reiner, Yekutieli and Benjamini 2002). The second, is fdr.gui() which creates a simple graphic user interface to access fdr.ma

Author: Yoav Benjamini, Effi Kenigsberg, Anat Reiner, Daniel Yekutieli

Maintainer: Effi Kenigsberg <effiken.fdrame at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("fdrame")

To cite this package in a publication, start R and enter:

    citation("fdrame")

Documentation

PDF R Script Annotation Overview
PDF   Reference Manual

Details

biocViews Microarray, DifferentialExpression, MultipleComparisons
Depends
Imports tcltk, graphics, grDevices, stats, utils
Suggests
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.24.0
Since Bioconductor 1.7 (R-2.2)

Package Downloads

Package Source fdrame_1.24.0.tar.gz
Windows Binary fdrame_1.24.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary fdrame_1.24.0.tgz
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