domainsignatures

Geneset enrichment based on InterPro domain signatures

Bioconductor version: 2.8

Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author: Florian Hahne, Tim Beissbarth

Maintainer: Florian Hahne <florian.hahne at novartis.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("domainsignatures")

To cite this package in a publication, start R and enter:

    citation("domainsignatures")

Documentation

PDF R Script Gene set enrichment using InterPro domain signatures
PDF   Reference Manual

Details

biocViews Bioinformatics, Annotation, Pathways
Depends R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports AnnotationDbi
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.12.0
Since Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source domainsignatures_1.12.0.tar.gz
Windows Binary domainsignatures_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary domainsignatures_1.12.0.tgz
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