cosmoGUI

GUI for constructing constraint sets used by the cosmo package

Bioconductor version: 2.8

cosmoGUI allows the user to interactively define constraint sets that can be used by the cosmo package to supervise the search for shared motifs in a set of DNA sequences. The constraints can be either adapted from a set of commonly used templates or defined from scratch.

Author: Fabian Gallusser, Oliver Bembom, and Sandrine Dudoit

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cosmoGUI")

To cite this package in a publication, start R and enter:

    citation("cosmoGUI")

Documentation

PDF   Reference Manual

Details

biocViews SequenceMatching, GUI
Depends tkWidgets, cosmo
Imports
Suggests
System Requirements
License LGPL (>= 2)
URL http://cosmoweb.berkeley.edu/intro.html, http://www.bepress.com/ucbbiostat/paper209/
Depends On Me
Imports Me
Suggests Me cosmo
Version 1.18.0
Since Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source cosmoGUI_1.18.0.tar.gz
Windows Binary cosmoGUI_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary cosmoGUI_1.18.0.tgz
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