clstutils

Tools for performing taxonomic assignment.

Bioconductor version: 2.8

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("clstutils")

To cite this package in a publication, start R and enter:

    citation("clstutils")

Documentation

PDF R Script clst
PDF R Script clstutils
PDF   Reference Manual

Details

biocViews HighThroughputSequencing, Classification, Visualization, QualityControl
Depends R (>= 2.10), clst, rjson, ape
Imports lattice, RSQLite
Suggests RUnit, RSVGTipsDevice
System Requirements
License GPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source clstutils_1.0.0.tar.gz
Windows Binary clstutils_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary clstutils_1.0.0.tgz
Package Downloads Report Download Stats

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