chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: 2.8

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chipseq")

To cite this package in a publication, start R and enter:

    citation("chipseq")

Documentation

PDF R Script A Sample ChIP-Seq analysis workflow
PDF   Reference Manual

Details

biocViews ChIPseq
Depends methods, IRanges(>= 1.7.13), GenomicRanges(>= 1.3.4), BSgenome, ShortRead
Imports BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats
Suggests GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Version 1.2.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source chipseq_1.2.0.tar.gz
Windows Binary chipseq_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary chipseq_1.2.0.tgz
Package Downloads Report Download Stats

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