To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chipseq")

In most cases, you don't need to download the package archive at all.

chipseq

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see chipseq.

chipseq: A package for analyzing chipseq data

Bioconductor version: 2.8

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

Citation (from within R, enter citation("chipseq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chipseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseq")

 

PDF Workflow.pdf
PDF   Reference Manual

Details

biocViews ChIPseq, Software
Version 1.2.0
In Bioconductor since BioC 2.5 (R-2.10) (6.5 years)
License Artistic-2.0
Depends methods, IRanges(>= 1.7.13), GenomicRanges(>= 1.3.4), BSgenome, ShortRead
Imports BSgenome, GenomicRanges, IRanges, lattice, methods, ShortRead, stats
LinkingTo
Suggests GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source chipseq_1.2.0.tar.gz
Windows Binary chipseq_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/chipseq/tree/release-2.8
Package Short Url http://bioconductor.org/packages/chipseq/
Package Downloads Report Download Stats

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