To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Vega")

In most cases, you don't need to download the package archive at all.

Vega

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see Vega.

An R package for copy number data segmentation

Bioconductor version: 2.8

Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.

Author: Sandro Morganella

Maintainer: Sandro Morganella <morganellaalx at gmail.com>

Citation (from within R, enter citation("Vega")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Vega")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Vega")

 

PDF Vega.pdf
PDF   Reference Manual

Details

biocViews DNACopyNumber, Software, aCGH
Version 1.0.0
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL-2
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Vega_1.0.0.tar.gz
Windows Binary Vega_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Vega/tree/release-2.8
Package Short Url http://bioconductor.org/packages/Vega/
Package Downloads Report Download Stats

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