Vega

An R package for copy number data segmentation

Bioconductor version: 2.8

Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.

Author: Sandro Morganella

Maintainer: Sandro Morganella <morganellaalx at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Vega")

To cite this package in a publication, start R and enter:

    citation("Vega")

Documentation

PDF R Script Vega
PDF   Reference Manual

Details

biocViews aCGH, DNACopyNumber
Depends
Imports
Suggests
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source Vega_1.0.0.tar.gz
Windows Binary Vega_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary Vega_1.0.0.tgz
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