A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: 2.8

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author: Robert Scharpf <rscharpf at>, Kevin Scharpf, and Ingo Ruczinski <ingo at>

Maintainer: Robert Scharpf <rscharpf at>

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PDF R Script VanillaICE Vignette
PDF   Reference Manual


biocViews Bioinformatics, CopyNumberVariants, SNP, GeneticVariability, Visualization
Depends R (>= 2.10.0), IRanges, oligoClasses(>= 1.9.53), methods
Imports SNPchip(>= 1.11.2), stats
Suggests genomewidesnp6Crlmm, hapmapsnp6, RColorBrewer, genefilter, RSQLite
System Requirements
License LGPL-2
Depends On Me
Imports Me
Suggests Me SNPchip
Version 1.14.0
Since Bioconductor 2.1 (R-2.6)

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Package Source VanillaICE_1.14.0.tar.gz
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MacOS 10.5 (Leopard) binary VanillaICE_1.14.0.tgz
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