Rolexa

Statistical analysis of Solexa sequencing data

Bioconductor version: 2.8

Provides probabilistic base calling, quality checks and diagnostic plots for Solexa sequencing data

Author: Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef

Maintainer: Jacques Rougemont <jacques.rougemont at epfl.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("Rolexa")

To cite this package in a publication, start R and enter:

    citation("Rolexa")

Documentation

PDF R Script Rolexa
PDF   Reference Manual

Details

biocViews Sequencing, DataImport, Preprocessing, QualityControl
Depends R (>= 2.9.0), mclust, graphics, grDevices, methods, ShortRead
Imports Biostrings, graphics, grDevices, IRanges, methods, ShortRead, stats
Suggests
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.8.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source Rolexa_1.8.0.tar.gz
Windows Binary Rolexa_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary Rolexa_1.8.0.tgz
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