RDRToolbox

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: 2.8

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RDRToolbox")

To cite this package in a publication, start R and enter:

    citation("RDRToolbox")

Documentation

PDF R Script A package for nonlinear dimension reduction with Isomap and LLE.
PDF plot3D.pdf
PDF RDRToolbox-003.pdf
PDF SwissRoll.pdf
PDF   Reference Manual

Details

biocViews Dimension, DimensionReduction, FeatureExtraction, Visualization, ClusterValidation, Microarray
Depends R (>= 2.9.0), rgl
Imports graphics, grDevices, methods, stats, MASS, rgl
Suggests golubEsets
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source RDRToolbox_1.2.0.tar.gz
Windows Binary RDRToolbox_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RDRToolbox_1.2.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center