PatientGeneSets

Patient-oriented gene-set analysis

Bioconductor version: 2.8

Patient-oriented analysis of mutations from cancer genome studies.

Author: Simina M. Boca, Giovanni Parmigiani

Maintainer: Simina M. Boca <sboca at jhsph.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("PatientGeneSets")

To cite this package in a publication, start R and enter:

    citation("PatientGeneSets")

Documentation

PDF R Script PatientGeneSetsTutorial
PDF   Reference Manual

Details

biocViews Bioinformatics
Depends R (>= 2.10.0), qvalue
Imports AnnotationDbi, limma, methods, stats
Suggests KEGG.db
System Requirements
License GPL (>= 2.0)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source PatientGeneSets_1.2.0.tar.gz
Windows Binary PatientGeneSets_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary PatientGeneSets_1.2.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center