NuPoP

An R package for nucleosome positioning prediction

Bioconductor version: 2.8

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>

Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("NuPoP")

To cite this package in a publication, start R and enter:

    citation("NuPoP")

Documentation

PDF R Script An R package for Nucleosome positioning prediction
PDF NuPoP-manual.pdf
PDF   Reference Manual

Details

biocViews genetics, visualization, classification
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License GPL-2
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Version 1.2.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source NuPoP_1.2.0.tar.gz
Windows Binary NuPoP_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary NuPoP_1.2.0.tgz
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