MotIV

Motif Identification and Validation

Bioconductor version: 2.8

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at chibi.ubc.ca>, Raphael Gottardo <raphael.gottardo at ircm.qc.ca>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MotIV")

To cite this package in a publication, start R and enter:

    citation("MotIV")

Documentation

PDF R Script The MotIV users guide
PDF   Reference Manual

Details

biocViews Microarray, ChIPchip, ChIPSeq, GenomicSequence
Depends
Imports graphics, grid, IRanges, lattice, methods, rGADEM, stats, utils
Suggests rtracklayer
System Requirements
License GPL 2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.6.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source MotIV_1.6.0.tar.gz
Windows Binary MotIV_1.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary MotIV_1.6.0.tgz
Package Downloads Report Download Stats

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