GeneticsPed

Pedigree and genetic relationship functions

Bioconductor version: 2.8

Classes and methods for handling pedigree data. It also includes functions to calculate genetic relationship measures as relationship and inbreeding coefficients and other utilities. Note that package is not yet stable. Use it with care!

Author: Gregor Gorjanc and David A. Henderson <dnadave at comcast.net>, with code contributions by Brian Kinghorn and Andrew Percy (see file COPYING)

Maintainer: David Henderson <DNADavenator at GMail.Com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GeneticsPed")

To cite this package in a publication, start R and enter:

    citation("GeneticsPed")

Documentation

PDF R Script Calculation of genetic relatedness/relationship between individuals in the pedigree
PDF R Script Pedigree handling
PDF R Script Quantitative genetic (animal) model example in R
PDF   Reference Manual

Details

biocViews Genetics
Depends R (>= 2.4.0), gdata (>= 2.3.0), genetics (>= 1.3.0), MASS
Imports
Suggests
System Requirements
License LGPL (>= 2.1)
URL http://rgenetics.org
Depends On Me
Imports Me
Suggests Me
Version 1.14.0
Since Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source GeneticsPed_1.14.0.tar.gz
Windows Binary GeneticsPed_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GeneticsPed_1.14.0.tgz
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