ExpressionView

Visualize biclusters identified in gene expression data

Bioconductor version: 2.8

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <Gabor.Csardi at unil.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ExpressionView")

To cite this package in a publication, start R and enter:

    citation("ExpressionView")

Documentation

PDF R Script ExpressionView
PDF R Script ExpressionView file format
PDF R Script How the ordering algorithm works
PDF   Reference Manual

Details

biocViews Classification, Visualization, Microarray, GeneExpression
Depends caTools, bitops
Imports methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Suggests ALL, hgu95av2.db, biclust, GO.db, KEGG.db, AnnotationDbi, affy
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source ExpressionView_1.4.0.tar.gz
Windows Binary ExpressionView_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ExpressionView_1.4.0.tgz
Package Downloads Report Download Stats

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