DEGseq

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: 2.8

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglikun at tsinghua.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglikun at tsinghua.edu.cn>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("DEGseq")

To cite this package in a publication, start R and enter:

    citation("DEGseq")

Documentation

PDF R Script DEGseq
PDF   Reference Manual

Details

biocViews RNAseq, Preprocessing, GeneExpression, DifferentialExpression
Depends R (>= 2.8.0), qvalue, ShortRead, samr, methods
Imports graphics, grDevices, methods, stats, utils
Suggests
System Requirements
License LGPL (>=2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.6.2
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source DEGseq_1.6.2.tar.gz
Windows Binary DEGseq_1.6.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary DEGseq_1.6.2.tgz
Package Downloads Report Download Stats

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