ChemmineR

Analysis of Small Molecule and Screening Data

Bioconductor version: 2.8

ChemmineR is an R package for analyzing small molecule and screening data. The new version of the package 'ChemmineR-V2' contains efficient functions and data containers for processing SDFs (structure data files), structural similarity searching, clustering/diversity analyses of compound libraries with a wide spectrum of algorithms. In addition, it offers utilities for managing complex data sets from high-throughput compound bio-assays, and visualization functions for clustering results and chemical structures.

Author: Y. Eddie Cao, Tyler Backman, Yan Wang, Thomas Girke

Maintainer: ChemmineR Team <see at url>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChemmineR")

To cite this package in a publication, start R and enter:

    citation("ChemmineR")

Documentation

PDF R Script gpls Tutorial
PDF   Reference Manual

Details

biocViews MicrotitrePlateAssay, CellBasedAssays, Visualization, Infrastructure, DataImport, Clustering, Bioinformatics, Proteomics
Depends R (>= 2.10.0), methods
Imports graphics, methods, stats, RCurl
Suggests
System Requirements
License Artistic-2.0
URL http://manuals.bioinformatics.ucr.edu/home/chemminer
Depends On Me
Imports Me
Suggests Me
Version 2.4.4
Since Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source ChemmineR_2.4.4.tar.gz
Windows Binary ChemmineR_2.4.4.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ChemmineR_2.4.4.tgz
Package Downloads Report Download Stats

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