ChIPsim

Simulation of ChIP-seq experiments

Bioconductor version: 2.8

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChIPsim")

To cite this package in a publication, start R and enter:

    citation("ChIPsim")

Documentation

PDF R Script Simulating ChIP-seq experiments
PDF   Reference Manual

Details

biocViews Infrastructure, Bioinformatics, ChIPseq
Depends Biostrings
Imports IRanges, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests actuar, zoo
System Requirements
License GPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.6.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source ChIPsim_1.6.0.tar.gz
Windows Binary ChIPsim_1.6.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ChIPsim_1.6.0.tgz
Package Downloads Report Download Stats

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