CRImage

CRImage a package to classify cells and calculate tumour cellularity

Bioconductor version: 2.8

CRImage provides functionality to process and analyze images, in particular to classify cells in biological images. Furthermore, in the context of tumor images, it provides functionality to calculate tumour cellularity.

Author: Henrik Failmezger <failmezger at cip.ifi.lmu.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>, Oscar Rueda <oscar.rueda at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Henrik Failmezger <failmezger at cip.ifi.lmu.de>, Yinyin Yuan <Yinyin.Yuan at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CRImage")

To cite this package in a publication, start R and enter:

    citation("CRImage")

Documentation

PDF cellularity2.pdf
PDF R Script CRImage Manual
PDF labeledImage.pdf
PDF   Reference Manual

Details

biocViews CellBiology, Classification
Depends EBImage
Imports MASS, e1071, foreach
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.2.0
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source CRImage_1.2.0.tar.gz
Windows Binary CRImage_1.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center