BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: 2.8

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BCRANK")

To cite this package in a publication, start R and enter:

    citation("BCRANK")

Documentation

PDF R Script BCRANK
PDF BCRANK_intro_fig1.pdf
PDF BCRANK_intro_fig2.pdf
PDF   Reference Manual

Details

biocViews SequenceMatching
Depends methods
Imports Biostrings
Suggests seqLogo
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.14.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source BCRANK_1.14.0.tar.gz
Windows Binary BCRANK_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary BCRANK_1.14.0.tgz
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