AffyCompatible

Affymetrix GeneChip software compatibility

Bioconductor version: 2.8

This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.

Author: Martin Morgan, Robert Gentleman

Maintainer: Martin Morgan <mtmorgan at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AffyCompatible")

To cite this package in a publication, start R and enter:

    citation("AffyCompatible")

Documentation

PDF R Script Annotation retrieval with NetAffxResource
PDF R Script Retrieving MAGE and ARR sample attributes
PDF   Reference Manual

Details

biocViews Infrastructure, Microarray, OneChannel
Depends R (>= 2.7.0), XML (>= 2.8-1), RCurl (>= 0.8-1), methods
Imports Biostrings
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me oneChannelGUI
Version 1.12.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source AffyCompatible_1.12.0.tar.gz
Windows Binary AffyCompatible_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary AffyCompatible_1.12.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center