Bioconductor Task View: DataImport

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Package Maintainer Title
aCGH Jane Fridlyand Classes and functions for Array Comparative Genomic Hybridization data.
affxparser Kasper Daniel Hansen Affymetrix File Parsing SDK
affyio Benjamin Milo Bolstad Tools for parsing Affymetrix data files
affylmGUI Keith Satterley GUI for affy analysis using limma package
ArrayExpress Audrey Kauffmann Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
beadarraySNP Jan Oosting Normalization and reporting of Illumina SNP bead arrays
codelink Diego Diez Manipulation of Codelink Bioarrays data.
ctc Antoine Lucas Cluster and Tree Conversion.
exonmap Crispin Miller High level analysis of Affymetrix exon array data
GeneRegionScan Lasse Folkersen GeneRegionScan
genomeIntervals Julien Gagneur Operations on genomic intervals
GEOquery Sean Davis Get data from NCBI Gene Expression Omnibus (GEO)
HELP Reid F. Thompson Tools for HELP data analysis
limma Gordon Smyth Linear Models for Microarray Data
limmaGUI Keith Satterley GUI for limma package
makecdfenv James W. MacDonald CDF Environment Maker
MANOR Pierre Neuvial CGH Micro-Array NORmalization
oligo Benilton Carvalho Tools for low-level analysis of oligonucleotide arrays.
oneChannelGUI Raffaele A Calogero This package extends the capabilities of affylmGUI graphical interface. Affymetrix 3' IVT, gene an exon arrays are actually implemented togheter with Illumina, GEO matrix series files and tab delimited files.
Ringo J. Toedling R Investigation of ChIP-chip Oligoarrays
rtracklayer Michael Lawrence R interface to genome browsers and their annotation tracks
SAGx Per Broberg, Statistical Analysis of the GeneChip
simpleaffy Crispin Miller Very simple high level analysis of Affymetrix data
xps Christian Stratowa Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays