Bioconductor Task View: Clustering

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Package Maintainer Title
adSplit Claudio Lottaz Annotation-Driven Clustering
BicARE Pierre Gestraud Biclustering Analysis and Results Exploration
ChemmineR Y. Eddie Cao A Compound Data Mining Framework
clusterStab James W. MacDonald Compute cluster stability scores for microarray data
CORREP Dongxiao Zhu Multivariate Correlation Estimator and Statistical Inference Procedures.
ctc Antoine Lucas Cluster and Tree Conversion.
flowClust Raphael Gottardo Clustering for Flow Cytometry
geneRecommender Greg Hather A gene recommender algorithm to identify genes coexpressed with a query set of genes
GOSemSim Guangchuang Yu GO-terms Semantic Similarity Measures
hopach Katherine S. Pollard Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
maanova Keith Sheppard Tools for analyzing Micro Array experiments
made4 Aedin Culhane Multivariate analysis of microarray data using ADE4
maigesPack Gustavo H. Esteves Functions to handle cDNA microarray data, including several methods of data analysis
MantelCorr Brian Steinmeyer Compute Mantel Cluster Correlations
Mfuzz Matthias Futschik Soft clustering of time series gene expression data
MLInterfaces V. Carey Uniform interfaces to R machine learning procedures for data in Bioconductor containers
puma Richard Pearson Propagating Uncertainty in Microarray Analysis
SAGx Per Broberg, Statistical Analysis of the GeneChip