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Package Maintainer Title
aroma.light Henrik Bengtsson Light-weight methods for normalization and visualization of microarray data using only basic R data types
ArrayExpress Audrey Kauffmann Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
arrayQuality Agnes Paquet Assessing array quality on spotted arrays
arrayQualityMetrics Audrey Kauffmann Quality metrics on microarray data sets
beadarraySNP Jan Oosting Normalization and reporting of Illumina SNP bead arrays
bridge Raphael Gottardo Bayesian Robust Inference for Differential Gene Expression
CALIB Hui Zhao Calibration model for estimating absolute expression levels from microarray data
convert Yee Hwa (Jean) Yang Convert Microarray Data Objects
copa James W. MacDonald Functions to perform cancer outlier profile analysis.
daMA Jobst Landgrebe Efficient design and analysis of factorial two-colour microarray data
genArise IFC Development Team Microarray Analysis tool
GEOquery Sean Davis Get data from NCBI Gene Expression Omnibus (GEO)
HELP Reid F. Thompson Tools for HELP data analysis
limma Gordon Smyth Linear Models for Microarray Data
limmaGUI Keith Satterley GUI for limma package
maDB Johannes Rainer Microarray database and utility functions for microarray data analysis.
maigesPack Gustavo H. Esteves Functions to handle cDNA microarray data, including several methods of data analysis
makePlatformDesign Benilton Carvalho Platform Design Package
MANOR Pierre Neuvial CGH Micro-Array NORmalization
marray Yee Hwa (Jean) Yang Exploratory analysis for two-color spotted microarray data
nnNorm Adi Laurentiu Tarca Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
nudge N. Dean Normal Uniform Differential Gene Expression detection
oligo Benilton Carvalho Oligonucleotide Arrays
OLIN Matthias Futschik Optimized local intensity-dependent normalisation of two-color microarrays
OLINgui Matthias Futschik Graphical user interface for OLIN
plw Magnus Astrand Probe level Locally moderated Weighted t-tests.
rama Raphael Gottardo Robust Analysis of MicroArrays
Ringo J. Toedling R Investigation of ChIP-chip Oligoarrays
SMAP Robin Andersson A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
snapCGH Thomas Hardcastle Segmentation, normalisation and processing of aCGH data.
spotSegmentation Chris Fraley Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots
stepNorm Yuanyuan Xiao Stepwise normalization functions for cDNA microarrays
vsn Wolfgang Huber Variance stabilization and calibration for microarray data