Bioconductor Task View: SequenceMatching

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Package Maintainer Title
BCRANK Adam Ameur Predicting binding site consensus from ranked DNA sequences
Biostrings H. Pages String objects representing biological sequences, and matching algorithms
cosmo Oliver Bembom Supervised detection of conserved motifs in DNA sequences
cosmoGUI Oliver Bembom GUI for constructing constraint sets used by the cosmo package
microRNA Robert Gentleman Data and functions for dealing with microRNAs
seqLogo Oliver Bembom Sequence logos for DNA sequence alignments