| Package | Maintainer | Title |
|---|---|---|
| affxparser | Kasper Daniel Hansen | Affymetrix File Parsing SDK |
| AffyCompatible | Martin Morgan | Affymetrix GeneChip software compatibility |
| affyContam | V. Carey | structured corruption of affymetrix cel file data |
| affyio | Benjamin Milo Bolstad | Tools for parsing Affymetrix data files |
| AnnotationDbi | Biocore Team c/o BioC user list | Annotation Database Interface |
| aroma.light | Henrik Bengtsson | Light-weight methods for normalization and visualization of microarray data using only basic R data types |
| arrayMvout | V. Carey | multivariate outlier detection for expression array QA |
| Biobase | Biocore Team c/o BioC user list | Biobase: Base functions for Bioconductor |
| BiocCaseStudies | Biocore Team c/o BioC user list | BiocCaseStudies: Support for the Case Studies Monograph |
| biocViews | Biocore Team c/o BioC user list | Categorized views of R package repositories |
| BioMVCClass | Elizabeth Whalen | Model-View-Controller (MVC) Classes That Use Biobase |
| Biostrings | H. Pages | String objects representing biological sequences, and matching algorithms |
| BSgenome | H. Pages | Infrastructure for Biostrings-based genome data packages |
| BufferedMatrix | Benjamin Milo Bolstad | A matrix data storage object held in temporary files |
| BufferedMatrixMethods | B. M. Bolstad | Microarray Data related methods that utlize BufferedMatrix objects |
| CGHbase | Sjoerd Vosse | CGHbase: Base functions and classes for arrayCGH data analysis. |
| convert | Yee Hwa (Jean) Yang | Convert Microarray Data Objects |
| DynDoc | Biocore Team c/o BioC user list | Dynamic document tools |
| externalVector | Biocore Team c/o BioC user list | Vector objects for R with external storage |
| flowCore | Nolwenn Le Meur | flowCore: Basic structures for flow cytometry data |
| flowQ | N. Le Meur | Qualitiy control for flow cytometry |
| flowUtils | Nishant Gopalakrishnan | Utilities for flow cytometry |
| flowViz | Florian Hahne | Visualization for flow cytometry |
| GeneSpring | Thon de Boer | GeneSpring R Integration Functions |
| GeneTraffic | Daniel Iordan | GeneTraffic R Integration Functions |
| GEOmetadb | Jack Zhu | A compilation of metadata from NCBI GEO |
| GSEABase | Biocore Team c/o BioC user list | Gene set enrichment data structures and methods |
| hypergraph | Robert Gentleman | A package providing hypergraph data structures |
| Icens | Biocore Team c/o BioC user list | NPMLE for Censored and Truncated Data |
| IRanges | Biocore Team c/o BioC user list | Low-level containers for storing sets of integer ranges |
| makePlatformDesign | Benilton Carvalho | Platform Design Package |
| microRNA | Robert Gentleman | Data and functions for dealing with microRNAs |
| MVCClass | Elizabeth Whalen | Model-View-Controller (MVC) Classes |
| oligoClasses | Benilton Carvalho | Classes for high-throughput SNP arrays |
| ontoTools | Vince Carey | graphs and sparse matrices for working with ontologies; formal objects for nomenclatures with provenance management |
| pdInfoBuilder | Benilton Carvalho | Platform Design Information Package Builder |
| pgUtils | Johannes Rainer | Utility functions for PostgreSQL databases |
| pkgDepTools | Seth Falcon | Package Dependency Tools |
| preprocessCore | Benjamin Milo Bolstad | A collection of pre-processing functions |
| Rdbi | Jianhua Zhang | Generic database methods |
| RdbiPgSQL | Jianhua Zhang | PostgreSQL access |
| rflowcyt | N. LeMeur | Statistical tools and data structures for analytic flow cytometry |
| Rintact | Tony Chiang | Interface to EBI Intact protein interaction data base |
| RpsiXML | Jitao David Zhang | R interface to PSI-MI 2.5 files |
| Rredland | VJ Carey | interface to redland RDF utilities |
| Ruuid | Biocore Team c/o BioC user list | Ruuid: Provides Universally Unique ID values |
| RWebServices | Martin Morgan | Expose R functions as web services through Java/Axis/Apache |
| ShortRead | Biocore Team c/o BioC user list | Base classes and methods for high-throughput short-read sequencing data. |
| splicegear | Laurent Gautier | splicegear |
| tkWidgets | J. Zhang | R based tk widgets |
| TypeInfo | Duncan Temple Lang | Optional Type Specification Prototype |
| weaver | Seth Falcon | Tools and extensions for processing Sweave documents |
| webbioc | Colin A. Smith | Bioconductor Web Interface |
| widgetInvoke | Jeff Gentry | Evaluation widgets for functions |
| widgetTools | Jianhua Zhang | Creates an interactive tcltk widget |