Bioconductor Task View: ExperimentData

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Package Maintainer Title
affydata Laurent Affymetrix Data for Demonstration Purpose
AffymetrixDataTestFiles Henrik Bengtsson Affymetrix data files (CEL, CDF, CHP, EXP, PSI) for testing
ALL Xiaochun Li A data package
ALLMLL B. M. Bolstad A subset of arrays from a large acute lymphoblastic leukemia (ALL) study
AmpAffyExample Rafael A. Irizarry Example of Amplified Data
beta7 Jean Yang Rodriguez et al. (2004) Differential Gene Expression by Memory/Effector T Helper Cells Bearing the Gut-Homing Receptor Integrin alpha4 beta7.
bronchialIL13 Vince Carey time course experiment involving il13
CCl4 Audrey Kauffmann Carbon Tetrachloride (CCl4) treated hepatocytes
ccTutorial Joern Toedling Data package for ChIP-chip tutorial
CLL Robert Gentleman A Package for CLL Gene Expression Data
colonCA W Sylvia Merk exprSet for Alon et al. (1999) colon cancer data
davidTiling Wolfgang Huber Data and analysis scripts for David, Huber et al. yeast tiling array paper
ecoliLeucine Laurent Gautier Experimental data with Affymetrix E. coli chips
estrogen R. Gentleman 2x2 factorial design exercise for the Bioconductor short course
faahKO Colin A. Smith Saghatelian et al. (2004) FAAH knockout LC/MS data
facsDorit Florian Hahne DKFZ FACS example data
fibroEset Sylvia Merk exprSet for Karaman et al. (2003) fibroblasts data
gaschYHS Vince Carey ExpressionSet for response of yeast to heat shock and other environmental stresses
gatingMLData Nishant Gopalakrishnan Data and XML files for GatingML Test suite
gcspikelite Mark Robinson Spike-in data for GC/MS data and methods within flagme
GGdata VJ Carey all 90 hapmap CEU samples, 47K expression, 4mm SNP
golubEsets Vince Carey exprSets for golub leukemia data
hapmap100khind Benilton Carvalho Sample data - Hapmap 100K HIND Affymetrix
hapmap100kxba Benilton Carvalho Sample data - Hapmap 100K XBA Affymetrix
hapmap500knsp Benilton Carvalho Sample data - Hapmap 500K NSP Affymetrix
hapmap500ksty Benilton Carvalho Sample data - Hapmap 500K STY Affymetrix
hapmapsnp5 Benilton Carvalho Sample data - Hapmap SNP 5.0 Affymetrix
hapmapsnp6 Benilton Carvalho Sample data - Hapmap SNP 5.0 Affymetrix
harbChIP VJ Carey Experimental Data Package: harbChIP
HEEBOdata Agnes Paquet HEEBO set and HEEBO controls.
HIVcDNAvantWout03 Chris Fraley T cell line infections with HIV-1 LAI (BRU)
humanStemCell R. Gentleman Human Stem Cells time course experiment
ITALICSData Guillem Rigaill ITALICSData
Iyer517 Vince Carey exprSets for Iyer, Eisen et all 1999 Science paper
kidpack Wolfgang Huber DKFZ kidney package
lumiBarnes Pan Du Barnes Benchmark Illumina Tissues Titration Data
lungExpression Robert Scharpf ExpressionSets for Parmigiani et al., 2004 Clinical Cancer Research paper
maqcExpression4plex Benilton Carvalho Sample Expression Data - MAQC / HG18 - NimbleGen
MAQCsubset VJ Carey Experimental Data Package: MAQCsubset
MAQCsubsetAFX Laurent Gatto MAQC data subset for the Affymetrix platform
MAQCsubsetILM Laurent Gatto MAQC data subset for the Illumina platform
MEEBOdata Agnes Paquet MEEBO set and MEEBO controls.
msdata Steffen Neumann Various Mass Spectrometry raw data example files
mvoutData VJ Carey affy and illumina raw data for assessing outlier detector performance
Neve2006 VJ Carey expression and CGH data on breast cancer cell lines
ppiData Tony Chiang A package that contains the bait to prey directed graphs for protein-protein interactions.
ProData Xiaochun Li SELDI-TOF data of Breast cancer samples
pumadata Richard Pearson Various data sets for use with the puma package
rfcdmin N. Le Meur Minimal Data Library for RFlowCyt examples
SNAData Denise Scholtens Social Networks Analysis Data Examples
SpikeIn Rafael A. Irizarry Affymetrix Spike-In Experiment Data
SpikeInSubset Rafael A. Irizarry Part of Affymetrix's Spike-In Experiment Data
stjudem Joern Toedling Microarray Data from Yeoh et al. in MACAT format
XhybCasneuf Tineke Casneuf EBI/PSB cross-hybridisation study package
yeastCC Sandrine Dudoit Spellman et al. (1998) yeast cell cycle microarray data
yeastExpData R. Gentleman Yeast Experimental Data
yeastGSData R. Gentleman Yeast Gold Standard Data