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<< /S /GoTo /D (section.1) >>
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(Overview of AffyTiling)
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<< /S /GoTo /D (section.2) >>
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(Getting Started)
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<< /S /GoTo /D (subsection.2.1) >>
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(Import and normalize a group of CEL files.)
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<< /S /GoTo /D (subsubsection.2.1.1) >>
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16 0 obj
(Basic extraction of all probes on human promoter tiling array.)
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<< /S /GoTo /D (subsubsection.2.1.2) >>
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20 0 obj
(Limiting probe extraction to intervals of particular interest.)
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<< /S /GoTo /D (subsection.2.2) >>
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(Finding the transcription start site nearest to each probe.)
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<< /S /GoTo /D (subsubsection.2.2.1) >>
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28 0 obj
(Obtain transcript coordinate table for the applicable genome build.)
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29 0 obj
<< /S /GoTo /D (subsubsection.2.2.2) >>
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32 0 obj
(Calling AffyTiling AssociateWithGenes function.)
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33 0 obj
<< /S /GoTo /D (section.3) >>
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36 0 obj
(Acquiring interval data table)
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37 0 obj
<< /S /GoTo /D (subsection.3.1) >>
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40 0 obj
(Determining the genome build for a BPMAP file.)
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41 0 obj
<< /S /GoTo /D (subsection.3.2) >>
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44 0 obj
(A table for the proper genome assembly.)
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45 0 obj
<< /S /GoTo /D (subsection.3.3) >>
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48 0 obj
(Read data table in R.)
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49 0 obj
<< /S /GoTo /D (subsection.3.4) >>
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52 0 obj
(Convert coordinates to newer genome builds.)
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<< /S /GoTo /D (section.4) >>
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(Further reading.)
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<< /S /GoTo /D (section.5) >>
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(References.)
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