CHANGES IN VERSION 1.3.3 ------------------------- NEW FEATURES o STAR fusion import function: importFusionData o STAR run function: starInstallation o STAR installation function: starRun o BiocParallel supported functions: STAR import fusionName supportingReads filterList CHANGES IN VERSION 1.3.9 ------------------------- NEW FEATURES o Rsubread aligner is used instead of tophat. CHANGES IN VERSION 1.3.12 -------------------------- NEW FEATURES o Picard-tools can be downloaded in chimara folder, picardInstallation. o The wrapper function validateSamFile uses picard tools to validate SAM/BAM files. o The wrapper function filterSamReads allows SAM and BAM filtering. CHANGES IN VERSION 1.3.15 ------------------------- NEW FEATURES o GapFiller Nadalin et al BMC Bioinformatics was implemented as de novo validation tool for fusion break point. CHANGES IN VERSION 1.5.2 ------------------------- NEW FEATURES o prettyPrint function was added to generate a table delimited file output form a list of fSet objects. o oncofuse annotation was added. CHANGES IN VERSION 1.6.1 ------------------------- NEW FEATURES o Fusions data generated by Rsubread can be imported. CHANGES IN VERSION 1.6.6 ------------------------- NEW FEATURES o Fusions data generated by fusionCatcher can be imported.