To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mdqc")
In most cases, you don't need to download the package archive at all.
mdqc
Mahalanobis Distance Quality Control for microarrays
Bioconductor version: 2.14
MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.
Author: Justin Harrington
Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>
Citation (from within R,
enter citation("mdqc")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mdqc")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mdqc")
| R Script | Introduction to MDQC | |
| Reference Manual |
Details
| biocViews | Microarray, QualityControl, Software |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.2.1), cluster, MASS |
| Imports | |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | arrayMvout |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | mdqc_1.26.0.tar.gz |
| Windows Binary | mdqc_1.26.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | mdqc_1.26.0.tgz |
| Mac OS X 10.9 (Mavericks) | mdqc_1.26.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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