%PDF-1.4 % 1 0 obj << /S /GoTo /D (section.1) >> endobj 4 0 obj (1 Introduction) endobj 5 0 obj << /S /GoTo /D (section.2) >> endobj 8 0 obj (2 Getting started) endobj 9 0 obj << /S /GoTo /D (section.3) >> endobj 12 0 obj (3 Working with 'C' Data) endobj 13 0 obj << /S /GoTo /D (subsection.3.1) >> endobj 16 0 obj (3.1 A simple example) endobj 17 0 obj << /S /GoTo /D (subsection.3.2) >> endobj 20 0 obj (3.2 Import/Export Data) endobj 21 0 obj << /S /GoTo /D (section.4) >> endobj 24 0 obj (4 Quality Control) endobj 25 0 obj << /S /GoTo /D (section.5) >> endobj 28 0 obj (5 HTCexp : single 'C' map experiment) endobj 29 0 obj << /S /GoTo /D (subsection.5.1) >> endobj 32 0 obj (5.1 Attached 5C data) endobj 33 0 obj << /S /GoTo /D (subsection.5.2) >> endobj 36 0 obj (5.2 Visualization of Interaction Maps) endobj 37 0 obj << /S /GoTo /D (subsection.5.3) >> endobj 40 0 obj (5.3 Data Transformation) endobj 41 0 obj << /S /GoTo /D (subsubsection.5.3.1) >> endobj 44 0 obj (5.3.1 Windowing) endobj 45 0 obj << /S /GoTo /D (subsubsection.5.3.2) >> endobj 48 0 obj (5.3.2 Data Normalization) endobj 49 0 obj << /S /GoTo /D (subsubsection.5.3.3) >> endobj 52 0 obj (5.3.3 Annotation of Interaction Maps) endobj 53 0 obj << /S /GoTo /D (subsection.5.4) >> endobj 56 0 obj (5.4 Comparison of HTCexp objects) endobj 57 0 obj << /S /GoTo /D (section.6) >> endobj 60 0 obj (6 HTClist : Multiple 'C' experiments) endobj 61 0 obj << /S /GoTo /D (subsection.6.1) >> endobj 64 0 obj (6.1 Visualization of Interaction Maps) endobj 65 0 obj << /S /GoTo /D (subsection.6.2) >> endobj 68 0 obj (6.2 Hi-C analysis) endobj 69 0 obj << /S /GoTo /D (section.7) >> endobj 72 0 obj (7 A word about speed and memory usage) endobj 73 0 obj << /S /GoTo /D [74 0 R /Fit ] >> endobj 106 0 obj << /Length 3714 /Filter /FlateDecode >> stream xڕZYsF~ׯ*1):qR9jUv?@$D2& %3~P6`st}fϾ_Wf,)4fv0+LYʠc=8H滻2|AߗӾ]dzصGbiL2͖;]{
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