To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

In most cases, you don't need to download the package archive at all.

rBiopaxParser

Parses BioPax files and represents them in R

Bioconductor version: 2.13

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

Citation (from within R, enter citation("rBiopaxParser")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rBiopaxParser")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

 

PDF biopax2classgraph.pdf
PDF biopaxsimple.pdf
PDF mergedpw.pdf
PDF R Script rBiopaxParser Vignette
PDF segclock.pdf
PDF wntplot.pdf
PDF   Reference Manual
Text   NEWS

Details

biocViews Software
Version 1.2.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL (>= 2)
Depends
Imports XML
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics
System Requirements
URL https://github.com/frankkramer/rBiopaxParser
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source rBiopaxParser_1.2.0.tar.gz
Windows Binary rBiopaxParser_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rBiopaxParser_1.2.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center