source("http://bioconductor.org/biocLite.R")
biocLite("qvalue")

qvalue

Q-value estimation for false discovery rate control

Bioconductor version: 2.13

This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.

Author: Alan Dabney <adabney at u.washington.edu> and John D. Storey <jstorey at u.washington.edu>, with assistance from Gregory R. Warnes <gregory_r_warnes at groton.pfizer.com>

Maintainer: John D. Storey <jstorey at u.washington.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("qvalue")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qvalue")

 

PDF		manual.pdf
PDF		pHist.pdf
PDF		qHist.pdf
PDF		qPlots.pdf
PDF	R Script	qvalue Tutorial
PDF		Reference Manual

Details

biocViews	MultipleComparisons, Software
Version	1.36.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	LGPL
Depends
Imports	graphics, grDevices, stats, tcltk
Suggests
System Requirements
URL
Depends On Me	anota, CancerMutationAnalysis, DEGseq, DrugVsDisease, netresponse, prot2D, r3Cseq, SSPA, webbioc
Imports Me	anota, DOSE, msmsTests, ReactomePA, sRAP, synapter, trigger, webbioc
Suggests Me	LBE, maanova, PREDA, RNAinteractMAPK

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	qvalue_1.36.0.tar.gz
Windows Binary	qvalue_1.36.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	qvalue_1.36.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats