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Handling and analysis of high-throughput microbiome census data.

Bioconductor version: 2.13

phyloseq provides a set of classes and tools to facilitate the import, storage, analysis, and graphical display of microbiome census data.

Author: Paul J. McMurdie <mcmurdie at>, Susan Holmes <susan at>, with contributions from Gregory Jordan and Scott Chamberlain

Maintainer: Paul J. McMurdie <mcmurdie at>

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biocViews Classification, Clustering, GeneticVariability, HighThroughputSequencing, MultipleComparisons, QualityControl, Software
Version 1.6.1
In Bioconductor since BioC 2.10 (R-2.15)
License AGPL-3
Depends R (>= 3.0.0), methods, ade4 (>= 1.5.2), picante (>= 1.5.2)
Imports ape (>= 3.0.8), biom (>= 0.3.9), Biostrings(>= 2.28.0), cluster (>= 1.14.4), foreach (>= 1.4), ggplot2 (>=, igraph (>=, multtest(>= 2.16.0), plyr (>= 1.8), reshape2 (>= 1.2.2), scales (>= 0.2.3), vegan (>= 2.0.7)
Suggests genefilter(>= 1.42.0), testthat (>= 0.7.1)
System Requirements
Depends On Me
Imports Me
Suggests Me

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