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Plot stacked logos for single or multiple DNA, RNA and amino acid sequence

Bioconductor version: 2.13

The motifStack package is designed for graphic representation of multiple motifs with different similarity scores. It works with both DNA/RNA sequence motif and amino acid sequence motif. In addition, it provides the flexibility for users to customize the graphic parameters such as the font type and symbol colors.

Author: Jianhong Ou, Michael Brodsky, Scot Wolfe and Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at>

Citation (from within R, enter citation("motifStack")):


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PDF R Script motifStack Vignette
PDF   Reference Manual
Text   NEWS


biocViews GenomicsSequence, SequenceMatching, Software, Visualization
Version 1.6.5
In Bioconductor since BioC 2.11 (R-2.15)
License GPL (>= 2)
Depends R (>= 2.15.1), methods, grImport, grid, MotIV, ade4
Imports XML
Suggests RUnit, BiocGenerics, MotifDb, RColorBrewer, BiocStyle
System Requirements
Depends On Me dagLogo
Imports Me
Suggests Me

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Package Source motifStack_1.6.5.tar.gz
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Mac OS X 10.6 (Snow Leopard) motifStack_1.6.5.tgz
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