To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mBPCR")

In most cases, you don't need to download the package archive at all.

mBPCR

Bayesian Piecewise Constant Regression for DNA copy number estimation

Bioconductor version: 2.13

Estimates the DNA copy number profile using mBPCR to detect regions with copy number changes

Author: P.M.V. Rancoita <paola.rancoita at gmail.com>, with contributions from M. Hutter <marcus.hutter at anu.edu.au>

Maintainer: P.M.V. Rancoita <paola.rancoita at gmail.com>

Citation (from within R, enter citation("mBPCR")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mBPCR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mBPCR")

 

PDF R Script mBPCR
PDF   Reference Manual

Details

biocViews Bioinformatics, CopyNumberVariants, Microarray, SNP, Software, aCGH
Version 1.16.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends oligoClasses, SNPchip
Imports Biobase
Suggests xtable
System Requirements
URL http://www.idsia.ch/~paola/mBPCR
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mBPCR_1.16.0.tar.gz
Windows Binary mBPCR_1.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mBPCR_1.16.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center