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Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.

Bioconductor version: 2.13

Generate customized protein sequence database from RNA-Seq data for proteomics search

Author: xiaojing wang

Maintainer: xiaojing wang < at>

Citation (from within R, enter citation("customProDB")):


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PDF R Script Introduction to customProDB
PDF   Reference Manual


biocViews Software
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports Rsamtools(>= 1.10.2), Biostrings(>= 2.26.3), IRanges, GenomicRanges(>= 1.13.18), GenomicFeatures(>= 1.13.15), biomaRt(>= 2.17.1), stringr, RCurl, plyr, VariantAnnotation(>= 1.7.28), rtracklayer, RSQLite, AnnotationDbi
Suggests BSgenome.Hsapiens.UCSC.hg19
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source customProDB_1.2.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) customProDB_1.2.0.tgz
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