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Analyze, manage and store bisulfite sequencing data

Bioconductor version: 2.13

Tools for analyzing and visualizing bisulfite sequencing data

Author: Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at>

Citation (from within R, enter citation("bsseq")):


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PDF R Script Analyzing WGBS with bsseq
PDF R Script The bsseq user's guide
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, Software
Version 0.10.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats
Imports scales, stats, graphics, Biobase, locfit
Suggests RUnit, bsseqData
System Requirements
Depends On Me bsseqData
Imports Me DSS
Suggests Me

Package Archives

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Package Source bsseq_0.10.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) bsseq_0.10.0.tgz
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