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Network Seriation And Modularization

Bioconductor version: 2.13

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt ( or other network analysis.

Author: Jing Wang < at>

Maintainer: Bing Zhang <bing.zhang at>

Citation (from within R, enter citation("NetSAM")):


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PDF R Script NetSAM
PDF   Reference Manual


biocViews Software
Version 1.2.1
In Bioconductor since BioC 2.13 (R-3.0)
License LGPL
Depends R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports methods
Suggests RUnit, BiocGenerics
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source NetSAM_1.2.1.tar.gz
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