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Protein Significance Analysis in LC-MS, SRM and DIA for Label-free or Label-based Proteomics Experiments

Bioconductor version: 2.13

A set of tools for protein significance analysis in label-free or LC-MS, SRM and DIA experiments.

Author: Meena Choi <choi67 at>, Ching-Yun Chang <chang54 at>, Olga Vitek <ovitek at>

Maintainer: Meena Choi <choi67 at>

Citation (from within R, enter citation("MSstats")):


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PDF Comparison1.pdf
PDF Comparison2.pdf
PDF Condition1.pdf
PDF Condition2.pdf
PDF DIA_constant_QQPlot4.pdf
PDF DIA_constant_ResidualPlot4.pdf
PDF DIA_ProfilePlot_269.pdf
PDF DIA_ProfilePlot_377.pdf
PDF Heatmap45Yeast1.pdf
PDF Heatmap45Yeast2.pdf
PDF LCMS_constant_ResidualPlot.pdf
PDF LCMS_Heatmap.pdf
PDF LCMS_ProfilePlot.pdf
PDF MSstatsOverview.pdf
PDF power.pdf
PDF ProfilePlot1.pdf
PDF ProfilePlot2.pdf
PDF R Script Protein quantification in LC-MS, SRM, DIA experiments
PDF QCPlot_all.pdf
PDF QCPlot_all_before.pdf
PDF QQPlot2.pdf
PDF ResidualPlot2.pdf
PDF SampleSizeReplicateYeast.pdf
PDF SRM_QQPlot_perFeature_heavy.pdf
PDF SRM_QQPlot_perFeature_light.pdf
PDF Volcano45Yeast1.pdf
PDF Volcano45Yeast2.pdf
PDF VolcanoYeast1.pdf
PDF VolcanoYeast2.pdf
PDF   Reference Manual
Text   NEWS


biocViews Software
Version 2.0.1
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 3.0), Rcpp, MSnbase
Imports lme4, marray, limma, gplots, ggplot2
System Requirements
Depends On Me
Imports Me
Suggests Me

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