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Statistical Testing for ChIP-Seq data sets

Bioconductor version: 2.13

This package detects statistically significant difference between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at>

Citation (from within R, enter citation("MMDiff")):


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PDF R Script Analysing ChIP-Seq data with the "MMDiff" package
PDF   Reference Manual


biocViews ChIPseq, MultipleComparisons, Software
Version 1.2.1
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends R (>= 2.14.0), GenomicRanges, parallel, DiffBind, GMD, Rsamtools
Imports GenomicRanges, IRanges, Biobase
Suggests MMDiffBamSubset
System Requirements
Depends On Me
Imports Me
Suggests Me MMDiffBamSubset

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Package Source MMDiff_1.2.1.tar.gz
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