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Chip Analysis Methylation Pipeline for Illumina HumanMethylation450

Bioconductor version: 2.13

The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number aberrations.

Author: Tiffany Morris, Lee Butcher, Andy Feber, Andrew Teschendorff, Ankur Chakravarthy and Stephan Beck

Maintainer: Tiffany Morris <Tiffany.Morris at>

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biocViews Bioinformatics, CopyNumberVariants, DNAmethylation, DataImport, DifferentialMethylation, IlluminaChip, Preprocessing, QualityControl, SNP, Software
Version 1.0.7
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 3.0.1), minfi, ChAMPdata, Illumina450ProbeVariants.db
Imports sva, IlluminaHumanMethylation450kmanifest, limma, RPMM, DNAcopy, preprocessCore, impute, marray, wateRmelon
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