CHANGES IN VERSION 1.0.0 ------------------------- BUG FIXES o Fixed P-value definition, now it depends on sequence length. See vignette for details. o Fixed splitting sequence into smaller computational pieces. The end of larger sequences was not searched properly. o Fixed handling of special IUPAC symbols (R, M, W, D, etc.). These are now cut off as N and - symbols. o Fixed scoring matrices for matches and geometrical compatibility. They were combined with wrong types of triplexes. Among other things this caused the output of the program to be slightly innaccurate for certain types of triplexes.