NEWS/ChangeLog for RedeR -------------------------- 1.6.0 2013-04-03 IMPROVED FEATURES o Interface simplification: several deprecated low-level functions were moved to the addGraph/getGraph related methods. BUG FIXES o Re-established conection with igraph (from igraph0 to the new igraph version). 1.5.0 - 1.4.0 2012-10-10 IMPROVED FEATURES o All graph attributes are now set via addGraph/getGraph methods. o Loading performance: better xml serialization, data packing and post formats. BUG FIXES o Re-established GUI -> R calls. o Plugins: re-established JavaGD conection if required! o Some routines were simplified for better maintenance. 1.3.0 - 1.2.0 2012-03-25 IMPROVED FEATURES o Loading performance, xml serialization, data packing and post formats. o Server/client connection. o Control over the app main features from R. o Node-container assignment options. BUG FIXES o Correction/fine-tune of dynamic layout function under zoom-in/zoom-out requests. o Merge out-edge function is fixed to rescale with node size. o Legend function is fixed for node/edge shape attributes. o Legend color is fixed for two-palette option. o The method 'addGraph' is fixed to load/convert directed graphs from igraph to RedeR. 1.1.0 - 1.0.0 2011-11-01 [1st public release in Bioconductor] NEW FEATURES o Improved settings for nested objects (parent, gscale, and gcoord features). o Improved interface, better connection between R and Java. o Improved uploading speed. o Added a pre-processed dataset to demonstrate the package in the upcoming case studies. o Container status now can be set to transparence. o Graphs can be printed using local PDF and PostScript printers (for better quality). o Nodes can be assigned to containers (to allow subnetworks with overlapping nodes) o Graphs can be added to the current session also via app. o Improved I/O routines and interactivity. o Improved static and dynamic layouts for containers. o New method to send series of graphs to RedeR. o New method to duplicate graphs and subgraphs in a network. o New method to nest graphs and subgraphs in a network. o New method to nest hclust objects in a network. o "RedeR" is set as the final name for the "dyNet-RDyNet" project. BUG FIXES o Some routines are more simplified for easier maintenance. o PostScript corrected for R interface. o Arrows set to large edges. o Zoom of nested objects now returns to default after released. o Synchronization of dynamic layout is fixed for dense networks. o Data loading/transfer via xmlrpc protocol is set for better performance. o KK layout algorithm was removed due to unresolved 3rd part exceptions. o Improvements on several features in both R and Java side of the package. 2011-03-23 [1st public release]