0.99.3 2010-10-16 - Clean up in examples. 0.99.2 2010-10-15 - Added clean ups to vignette to build OK under Windows (stoping cluster and deleting ff objects and tmp directory). 0.99.1 2010-10-13 - multicore moved to "Enhances" to allow easier R CMD check in Windows. 0.99.0 2010-10-06 - First version in BioC; same as 2.1.3 as per old numbering system. 2.1.3 2010-10-06 - Rmpi in "Enhances", not "Suggests", to allow for R CMD check in Mac and Windows. 2.1.2 2010-10-04 - rsprng no longer in depends; L'Ecuyer as default random number generator. - Using R's registration mechanism for C routines. - Decreased size of example to speed up R CMD check. - SOCK is default cluster, and Rmpi not loaded by us. 2.1.1 2010-09-30 - Output to CGHregions and input from limma and snapCGH. Changes in functions, help, vignnette. - Can also use rlecuyer. - Works with R-2.11 (adapted to differences in "inherits"). 2.1.0 2010-09-23 - First fully working version for BioC. Versioning changed! 1.0.0 2010-10-16 - First version in BioC release (2.7). 1.1.0 2010-10-28 - Clean up changes inside functions, deleting tmp. objects. (all in BioC devel version) 1.1.1 2011-03-27 - Trying to pass check in Windows 64-bit: all examples now execute within their temp dirs, which get deleted. And more Sys.sleep. - Further work in code to remove some unneeded temporary ff objects inside functions. 1.2.0 2011-04-14 - Version in BioC 2.8 1.2.1 2011-06-06 - Changed "if" in stop.na.inf, as per Dundan Murdoch's suggestion. 1.3.2 2011-10-18 - Added unloading of rlecuyer, to prevent problems with cleanEx during R CMD check. 1.3.3 2011-10-19 - Added more "Sys.sleep" to see if we can get it not to crash in Windoze. 1.9.0 2013-03-23 - Commented out unused code that gave warnings in checks. - Removed partial matching (was giving notes). - Note: version 2.0 is almost ready, so work on current version is now limited.