wateRmelon

Illumina 450 methylation array normalization and metrics

Bioconductor version: Release (2.12)

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic

Maintainer: Leo <Leonard.Schalkwyk at kcl.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("wateRmelon")

To cite this package in a publication, start R and enter:

    citation("wateRmelon")

Documentation

PDF	R Script	Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.0.3
In Bioconductor since	BioC 2.13 (R-2.18)
License	GPL-3
Depends	R (>= 2.10), limma, methods, matrixStats, methylumi, lumi, IlluminaHumanMethylation450k.db, ROC
Imports
Suggests	RPMM
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	wateRmelon_1.0.3.tar.gz
Windows Binary	wateRmelon_1.0.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	wateRmelon_1.0.3.tgz
Package Downloads Report	Download Stats

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