rnaSeq secondary analyses

Bioconductor version: Release (2.12)

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script rnaSeqMap primer
PDF   Reference Manual


biocViews Annotation, Bioinformatics, DifferentialExpression, GeneExpression, HighThroughputSequencing, RNAseq, ReportWriting, SAGE, Software, Transcription, Visualization
Version 2.14.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL-2
Depends R (>= 2.11.0), methods, xmapcore, Biobase, Rsamtools
Imports GenomicRanges, IRanges, edgeR, DESeq, DBI, RMySQL (>= 0.6-0)
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source rnaSeqMap_2.14.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard) rnaSeqMap_2.14.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center