Principal Coordinates and Hotelling's T-Square method

Bioconductor version: Release (2.12)

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author: Sarah Song, Mik Black

Maintainer: Sarah Song <qson003 at stat.auckland.ac.nz>

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PDF HowToUseGeneLocator.pdf
PDF R Script PCOT2 Vignette
PDF   Reference Manual


biocViews DifferentialExpression, Microarray, Software
Version 1.28.0
In Bioconductor since BioC 1.9 (R-1.14)
License GPL (>= 2)
Depends R (>= 2.0.0), grDevices, Biobase, amap
Suggests multtest, hu6800.db, KEGG.db, mvtnorm
System Requirements
Depends On Me
Imports Me
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Package Source pcot2_1.28.0.tar.gz
Windows Binary pcot2_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pcot2_1.28.0.tgz
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