netresponse

NetResponse: functional network analysis

Bioconductor version: Release (2.12)

Algorithms for functional network analysis. Includes an implementation of a variational Dirichlet process Gaussian mixture model for nonparametric mixture modeling.

Author: Leo Lahti, Olli-Pekka Huovilainen, Antonio Gusmao and Juuso Parkkinen

Maintainer: Leo Lahti <leo.lahti at iki.fi>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("netresponse")

To cite this package in a publication, start R and enter:

    citation("netresponse")

Documentation

PDF R Script netresponse
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews CellBiology, Clustering, DifferentialExpression, GeneExpression, Genetics, GraphsAndNetworks, Microarray, NetworkAnalysis, Software, Transcription
Version 1.12.0
In Bioconductor since BioC 2.7 (R-2.12)
License GPL (>=2)
Depends R (>= 2.15.1), dmt, igraph0, infotheo, ggplot2, graph, mclust, methods, minet, parallel, qvalue, RColorBrewer, reshape, Rgraphviz
Imports
Suggests
System Requirements
URL http://netpro.r-forge.r-project.org/
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source netresponse_1.12.0.tar.gz
Windows Binary netresponse_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) netresponse_1.12.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center