mgsa
Model-based gene set analysis
Bioconductor version: Release (2.12)
Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.
Author: Sebastian Bauer <mail at sebastianbauer.info>, Julien Gagneur <gagneur at genzentrum.lmu.de>
Maintainer: Sebastian Bauer <mail at sebastianbauer.info>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("mgsa")
To cite this package in a publication, start R and enter:
citation("mgsa")
Documentation
| R Script | Overview of the mgsa package. | |
| Reference Manual |
Details
| biocViews | GO, GeneSetEnrichment, Pathways, Software |
| Version | 1.8.1 |
| In Bioconductor since | BioC 2.8 (R-2.13) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0), methods, gplots |
| Imports | graphics, stats, utils |
| Suggests | DBI, RSQLite, GO.db |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | gCMAP |
Package Downloads
| Package Source | mgsa_1.8.1.tar.gz |
| Windows Binary | mgsa_1.8.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | mgsa_1.8.1.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: webmaster@bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2013
