matchBox

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Bioconductor version: Release (2.12)

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("matchBox")

To cite this package in a publication, start R and enter:

    citation("matchBox")

Documentation

PDF R Script Working with the matchBox package
PDF   Reference Manual

Details

biocViews Annotation, Microarray, MultipleComparisons, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 2.11 (R-2.16)
License Artistic-2.0
Depends R (>= 2.8.0)
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Downloads

Package Source matchBox_1.2.0.tar.gz
Windows Binary matchBox_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) matchBox_1.2.0.tgz
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